Package: viraldomain 0.0.6.9000

viraldomain: Applicability Domain Methods of Viral Load and CD4 Lymphocytes

Provides methods for assessing the applicability domain of models that predict viral load and CD4 (Cluster of Differentiation 4) lymphocyte counts. These methods help determine the extent of extrapolation when making predictions.

Authors:Juan Pablo Acuña González [aut, cre]

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viraldomain.pdf |viraldomain.html✨
viraldomain/json (API)
NEWS

# Install 'viraldomain' in R:

install.packages('viraldomain', repos = c('https://juanv66x.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/juanv66x/viraldomain/issues

Datasets:

sero - Seropositive Data for Applicability Domain Testing
viral - Predictive Modeling Data for Viral Load and CD4 Lymphocyte Counts

On CRAN:

applicability-domain cd4-lymphocytes viral-load

3.23 score 17 scripts 182 downloads 6 exports 73 dependencies

Last updated 3 months agofrom:3ee490ab99. Checks:7 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 15 2025
R-4.5-win	OK	Jan 15 2025
R-4.5-linux	OK	Jan 15 2025
R-4.4-win	OK	Jan 15 2025
R-4.4-mac	OK	Jan 15 2025
R-4.3-win	OK	Jan 15 2025
R-4.3-mac	OK	Jan 15 2025

Exports:knn_domain_score mars_domain_score nn_domain_score normalized_domain_plot rf_domain_score simple_domain_plot

Dependencies:applicable class cli clock codetools colorspace cpp11 data.table diagram digest dplyr fansi farver future future.apply generics ggplot2 globals glue gower gtable hardhat ipred isoband KernSmooth labeling lattice lava lifecycle listenv lubridate magrittr MASS Matrix mgcv modelenv munsell nlme nnet numDeriv parallelly parsnip pillar pkgconfig prettyunits prodlim progressr proxyC purrr R6 RColorBrewer Rcpp RcppArmadillo recipes rlang rpart scales shape SQUAREM stringi stringr survival tibble tidyr tidyselect timechange timeDate tzdb utf8 vctrs viridisLite withr workflows

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate the K-Nearest Neighbor model domain applicability score	knn_domain_score
Calculate the MARS model domain applicability score	mars_domain_score
Calculate the Neural Network model domain applicability score	nn_domain_score
Create a Normalized Domain Plot	normalized_domain_plot
Calculate the Random Forest Model Domain Applicability Score	rf_domain_score
Seropositive Data for Applicability Domain Testing	sero
Create a Simple Domain Plot	simple_domain_plot
Predictive Modeling Data for Viral Load and CD4 Lymphocyte Counts	viral